The Primary Information of Cyclic Nucleotide-regulated Channels (CNG)

1. Summary

Cyclic nucleotide-gated (CNG) channels are ion channels which are activated by the binding of cGMP or cAMP [1]. Cyclic nucleotide gated channel contains two kind subunits, alpha-subunit (alpha 1, alpha 2, alpha 3, alpha 4) and beta-subunit (beta 1, beta 3).

A CNG channel consists of four subunits around a central pore. Each protein subunit consists 6 transmembrane segments (S1-S6), a P-loop, intracellular amino terminal region, and carboxy terminal region. The P-loop and S6 segments around the pore, which plays a role in ion conduction. There is a cyclic nucleotide binding domain (CNBD) and connection region to the S6 segment in the carboxy terminal. There is a post-CNDB region in the amino terminal [2].

2. Binding Sites

The channel contains three CNGA3 and one CNGB3 subunits. Arg403 (yellow sphere) in the pore helix of CNGB3 projects into an asymmetric selectivity filter and forms hydrogen bonds with two pore-lining backbone carbonyl oxygens. Arg442 in S6 of CNGB3 protrudes into and occludes the pore below the hydrophobic cavity gate previously observed in homotetrameric CNGA channels. It is interesting that Arg403Gln is a disease mutation, and Arg442 is replaced by glutamine in some animal species with dichromatic or monochromatic vision [3].

3. Target List

ICDB_Pro ID Protein Name Organism Uniport Accession Number Gene Name
ICDB_Pro_0242Cyclic nucleotide-gated ion channel 1 Arabidopsis thaliana (Mouse-ear cress)O65717CNGC1 At5g53130 MFH8.6
ICDB_Pro_1632Cyclic nucleotide-gated ion channel 11Arabidopsis thaliana (Mouse-ear cress)Q9SKD6CNGC11 At2g46440 F11C10.13
ICDB_Pro_1268Cyclic nucleotide-gated ion channel 17Arabidopsis thaliana (Mouse-ear cress)Q8L7Z0CNGC17 At4g30360 F17I23_300
ICDB_Pro_1553Cyclic nucleotide-gated ion channel 18Arabidopsis thaliana (Mouse-ear cress)Q9LEQ3CNGC18 At5g14870 T9L3_170
ICDB_Pro_0243Cyclic nucleotide-gated ion channel 2Arabidopsis thaliana (Mouse-ear cress)O65718CNGC2 DND1 At5g15410 T20K14_20
ICDB_Pro_1386Cyclic nucleotide-gated ion channel 4Arabidopsis thaliana (Mouse-ear cress)Q94AS9CNGC4 HLM1 At5g54250 MDK4.7
ICDB_Pro_1415Cyclic nucleotide-gated potassium channel mll3241Mesorhizobium japonicum (strain LMG 29417 / CECT 9101 / MAFF 303099) (Mesorhizobium loti (strain MAFF 303099))Q98GN8mll3241
ICDB_Pro_0896Cyclic nucleotide-gated potassium channel RHE_CH03180Rhizobium etli (strain ATCC 51251 / DSM 11541 / JCM 21823 / NBRC 15573 / CFN 42)Q2K5E1RHE_CH03180
ICDB_Pro_1556Probable cyclic nucleotide-gated ion channel 10 Arabidopsis thaliana (Mouse-ear cress)Q9LNJ0CNGC10 ACBK1 At1g01340 F6F3.13
ICDB_Pro_1631Probable cyclic nucleotide-gated ion channel 14Arabidopsis thaliana (Mouse-ear cress)Q9SJA4CNGC14 At2g24610 F25P17.9